Visualization

Avogadro

Avogadro is an advanced molecule editor and visualizer

CERN Open Data

Physical Science and Technology

A portal that hosts several records, released as open data by the LHC experiments.

Coot

Biology

Macromolecular model building based on X-ray data.

Crystallography Open Database

The Crystallography Open Database is an open database of crystal structures.

DataBank

An analysis and visualisation tool that contains collections of time series data.

Datahero

Software platform that can be used to create data visualization and dashboards.

DataWarrior

A Free Cheminformatics Program for Data Visualization and Analysis

Dedoose

Biology

A cross-platform app for analyzing qualitative and mixed methods research.

Desmos

Physical Science and Technology

An advanced graphing calculator as a web application and a mobile application.

El-MAVEN

Biology

An open-source high throughput metabolomics tool

Emerald Cloud Laboratory

Biology

Web-based life sciences lab to run experiments from anywhere in the world.

eSurveys Pro

Biology

A software solution that enables them to conduct online surveys.

EyeWire

Biology

A game to map the 3D structure of neurons to contribute to scientific discovery.

Galaxy

Biology

An open web-based platform for biomedical data integration and analysis

Genome Compiler

Biology

A free, all-in-one online software platform for DNA design.

GIMP

Biology

Image editor.

GNU Octave

Biology

Octave is software featuring a high-level programming language, primarily intended for numerical computations. It is the major free alternative to MATLAB.

gnuplot

Biology

gnuplot is a command-line utility for drawing graphs as well as visualizing and fitting data.

Google Forms

Biology

Easily create custom forms for surveys and questionnaires.

Google Ngram Viewer

Biology

Chart frequencies of words/short sentences in Google Books

GraphPad Prism

Analysis and graphing solution designed for scientific research

GROMACS

Physical Science and Technology

A software package for the simulation of biological macromolecules.

Image Map Tool

Create all types of image maps.

Import.io

Biology

A data extractor that requires no coding, turning the web into data

InContext

Navigate through RDF relations in a smooth and understandable way.

Isidore

Sociology

A search engine that provides access to digital data in humanities and social sciences.

JCB DataViewer

Biology

A web-based, multi-dimensional image data-viewing application.

JournalMap

Biology

A free and open web-based platform for finding scientific literature.

Jupyter Notebook

To create and share documents that contain live code, equations, media, and text

KNIME

KNIME a free and open-source data analytics, reporting, and integration platform

Lead Discovery

It freely analyze data and create analytic applications and dashboard.

LimeSurvey

Biology

A survey software to create online surveys

Maple

Physical Science and Technology

A tool for symbolic numeric computation and visualization.

Marvin

A full-featured chemical editor for making science accessible on all platforms

Molden

Physical Science and Technology

A general molecular and electronic structure processing program

NWChem

Physical Science and Technology

An open source computational chemistry program package developed at EMSL/PNNL.

ONE DATA

Physical Science and Technology

End to end analytics platform developed to bring prototypes into production.

OpenML

Biology

A free and open science machine learning platform

Paperscape

Biology

An open, online repository for scientific research papers.

PLOS Cloud Explorer

Biology

Visualization of PLOS articles by subject areas.

Plot.ly

Plotly Dash is a framework for building analytic web apps

Protein Data Bank

Biology

It provides a global resource for research and education in biology and medicine.

PubReader

Biology

Alternative web presentation to read literature in PMC and Bookshelf.

PyMOL

A comprehensive software package for rendering and animating 3D structures

Quantum ESPRESSO

Physical Science and Technology

A modular and open-source software project for quantum simulations of materials

RawGraphs

Biology

The missing link between spreadsheets and data visualization.

Research For Good

Biology

An online sample company provides online market research surveys.

Rpubs

Biology

Web publishing of RMarkdown documents created in RStudio

RStudio

Provides open source and enterprise-ready professional software for data science

SAS

A set of integrated tools & solutions for accessing, managing and analyzing data