Analysis

Addgene

Biology

A non-profit plasmid sharing platform

AMiner

Biology

A free online service for academic social network analysis and mining.

AskWonder

Provides instant access to the intellect and fact-finding skills of a network of analysts.

AsPredicted

Health

Generates a short, time-stamped pre-registration document that is easy to share.

Avogadro

Avogadro is an advanced molecule editor and visualizer

Benchling

Biology

Transform your R&D with the industry's most widely adopted Life Sciences R&D Cloud.

Bibliogo

Biology

Free reference management and collaboration tool that allows users to search an online catalog of millions of documents.

Biostars

Biology

Focus on bioinformatics, computational genomics, and biological data analysis.

Bright Lab

Biology

Brilliantly Connected Research

Cambridge Structural Database (CSD)

Biology

Repository for small-molecule organic and metal-organic crystal structures.

CitEc

Provides citation analysis for economics papers distributed in the RePEc digital library.

ContentMine

Biology

Aims to enable everyone to perform research.

Coot

Biology

Macromolecular model building based on X-ray data.

COSMOtherm

Physical Science and Technology

COSMOtherm is the universal tool for predictive property calculation of liquids, and combines quantum chemistry and thermodynamics.

CrowdTruth

Biology

Open-source framework for crowdsourcing annotation data on text, images, videos

Cytoscape

Biology

Network Data Integration, Analysis, and Visualization in a Box.

Dataverse

Open source research data repository software

DataWarrior

A Free Cheminformatics Program for Data Visualization and Analysis

Dedoose

Biology

A cross-platform app for analyzing qualitative and mixed methods research.

Desmos

Physical Science and Technology

An advanced graphing calculator as a web application and a mobile application.

dftd4

Biology

A generally applicable atomic-charge dependent London dispersion correction.

DISK

Biology

Automate the hypothesize-test-evaluate discovery cycle

DocGraph - Linea

Health

Discover, aggregate, and enrich new open healthcare datasets.

El-MAVEN

Biology

An open-source high throughput metabolomics tool

Emerald Cloud Laboratory

Biology

Web-based life sciences lab to run experiments from anywhere in the world.

eSurveys Pro

Biology

A software solution that enables them to conduct online surveys.

EyeWire

Biology

A game to map the 3D structure of neurons to contribute to scientific discovery.

Findings

Biology

Electronic lab notebook (with some protocol sharing)

Flypapers

Flypapers is a drosophila literature Twitterbot

Galaxy

Biology

An open web-based platform for biomedical data integration and analysis

Galaxy Hub

Biology

Community Hub for computational biology

Galaxy Zoo

Crowdsourced science project to assist in classifying over a million galaxies

GNU Octave

Biology

Octave is software featuring a high-level programming language, primarily intended for numerical computations. It is the major free alternative to MATLAB.

Google Forms

Biology

Easily create custom forms for surveys and questionnaires.

Google Ngram Viewer

Biology

Chart frequencies of words/short sentences in Google Books

GraphPad Prism

Analysis and graphing solution designed for scientific research

Hackuarium

Biology

An open & community-driven citizen biohacking lab in the Greater Lausanne area.

Hivebench

Biology

Digital laboratory notebook that helps researchers prepare

ImageJ

Biology

Image processing and analysis.

Import.io

Biology

A data extractor that requires no coding, turning the web into data

InnoCentive

Biology

Crowdsourcing commission research and development problems.

Inorganic Crystal Structure Database

Physical Science and Technology

A comprehensive collection of crystal structure entries for inorganic materials

JMol

Biology

An open-source browser-based HTML5 viewer and stand-alone Java viewer for chemical structures in 3D.

Jupyter Notebook

To create and share documents that contain live code, equations, media, and text

Kaggle

Biology

Kaggle is an online community of data scientists and machine learners.

Kaggle Datasets

Biology

Community of data scientists to share, analyze, & discuss data

KNIME

KNIME a free and open-source data analytics, reporting, and integration platform

Labfolder

Biology

An electronic lab notebook tool to record, integrate and manage scientific data.

LabGuru

Biology

All-in-one
 electronic lab notebook.

Lead Discovery

It freely analyze data and create analytic applications and dashboard.