Experiment

Addgene

Biology

A non-profit plasmid sharing platform

AMiner

Biology

A free online service for academic social network analysis and mining.

Argo

Biology

A web text mining-based workbench supporting curation

Arrowsmith

Biology

Identify biologically meaningful links between two sets of Medline articles.

AskWonder

Provides instant access to the intellect and fact-finding skills of a network of analysts.

AsPredicted

Health

Generates a short, time-stamped pre-registration document that is easy to share.

Benchling

Biology

Transform your R&D with the industry's most widely adopted Life Sciences R&D Cloud.

Bibliogo

Biology

Free reference management and collaboration tool that allows users to search an online catalog of millions of documents.

Bright Lab

Biology

Brilliantly Connected Research

Cambridge Structural Database (CSD)

Biology

Repository for small-molecule organic and metal-organic crystal structures.

Clustermarket

Access thousands of scientific instruments on demand

ContentMine

Biology

Aims to enable everyone to perform research.

Coot

Biology

Macromolecular model building based on X-ray data.

Crossref Simple Text Query

Biology

Batch retrieving DOI's based on free style bibliography

CrowdTruth

Biology

Open-source framework for crowdsourcing annotation data on text, images, videos

Dataverse

Open source research data repository software

DMP Tool

Biology

Data management plan templates for many large funding agencies.

Docollab

Biology

A collaborative workspace for projects, tasks, documents, spreadsheets.

eLABInventory

Biology

An intuitive and flexible solution for inventory management in laboratories.

Emerald Cloud Laboratory

Biology

Web-based life sciences lab to run experiments from anywhere in the world.

Engauge Digitizer

Biology

A tool for plot digitization. Besides obtaining the data, the config is stored for each plot individually, making the process reproducible and more fail proof.

eSurveys Pro

Biology

A software solution that enables them to conduct online surveys.

Experimonth

Biology

Citizen science; month-long challenges to collect data

Findings

Biology

Electronic lab notebook (with some protocol sharing)

Firefly

A freely available ab initio and DFT computational chemistry program

Flypapers

Flypapers is a drosophila literature Twitterbot

GNU Octave

Biology

Octave is software featuring a high-level programming language, primarily intended for numerical computations. It is the major free alternative to MATLAB.

Google Forms

Biology

Easily create custom forms for surveys and questionnaires.

Google Ngram Viewer

Biology

Chart frequencies of words/short sentences in Google Books

Grants.gov

Biology

Find and apply for grants in the US federal government.

GROMACS

Physical Science and Technology

A software package for the simulation of biological macromolecules.

Hivebench

Biology

Digital laboratory notebook that helps researchers prepare

Import.io

Biology

A data extractor that requires no coding, turning the web into data

Kaggle

Biology

Kaggle is an online community of data scientists and machine learners.

KNIME

KNIME a free and open-source data analytics, reporting, and integration platform

LabArchives

Biology

A cloud-based Electronic Lab Notebook application

Labfolder

Biology

An electronic lab notebook tool to record, integrate and manage scientific data.

LabGuru

Biology

All-in-one
 electronic lab notebook.

LabSuit

Biology

A laboratory inventory management, share with other labs

Leukippos

Biology

An open synthetic biology lab in the cloud

LimeSurvey

Biology

A survey software to create online surveys

Maestro

Biology

Graphical user interface to Schrödinger‘s computational modelling suite.

ManyLabs

Biology

Tools and documentation for citizen science

Maple

Physical Science and Technology

A tool for symbolic numeric computation and visualization.

Mark2Cure

Biology

Crowdsourced annotation of biochemical papers.

Matlab

Sociology

Multi-paradigm numerical computing environment & proprietary programming language.

mloss

Physical Science and Technology

Producing reproducible research via open-source software.

Molden

Physical Science and Technology

A general molecular and electronic structure processing program

Morph.io

Biology

A free, open source web scraping tool

myExperiment

Earth and Environment

A collaborative and social network for workflows and related research objects